[Biojava-l] Error loading ontology terms

Francois Pepin fpepin at cs.mcgill.ca
Fri Nov 25 11:15:34 EST 2005


I've applied the patch in the cvs. It compiles and runs the test but I
don't have a bioSQL database handy to test that particular bug.

Francois

On Thu, 2005-11-24 at 15:29 +0000, Matthew Pocock wrote:
> We had the same problem. We fixed it in a copy of biojava, but my cvs account 
> has been suspended. Somebody there with commit privilages that will roll our 
> fix back in?
> 
> Matthew
> 
> On Thursday 24 November 2005 13:51, Felix Dreher wrote:
> > Hello,
> >
> > we have a problem with the connection to a BioSQL Database.
> > When we start our application for the very first time and try to connect
> > to the Database, it throws an SQLException "Connection is closed."
> > After that, when we simply repeat the process, everything works fine and
> > one can store Sequences in the DB.
> > But when we stop the whole project (which is a JavaServerPages Project
> > inside the Tomcat-Container) and restart it, a new error message
> > appears: "Error loading ontology terms."
> >
> > Maybe somebody has a hint....
> >
> > Greetings,
> > Felix
> >
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