AW: [Biojava-l] location of biojava.jar on a linux system

[BIBIS, Garnier, Christophe]

another solution is to create a shell script file with the executable rights
(say application.sh) and write inside something like: 
#!/bin/sh

# ---
# run the application
# ---

# --- Global Environment Variables ---

THIS_PATH=`pwd`

CLASSPATH=$THIS_PATH

CLASSPATH=$CLASSPATH:/bio/tools/biojava/biojava.jar
CLASSPATH=$CLASSPATH:/bio/tools/biojava/bytecode-0.92.jar
CLASSPATH=$CLASSPATH:/bio/tools/biojava/jakarta-regexp.jar
CLASSPATH=$CLASSPATH:/bio/tools/biojava/xerces.jar 

CLASSPATH=$CLASSPATH:__ANOTHER_JAR_PATH__
CLASSPATH=$CLASSPATH:__ANOTHER_JAR_PATH__
CLASSPATH=$CLASSPATH:__ANOTHER_JAR_PATH__
CLASSPATH=$CLASSPATH:__ANOTHER_JAR_PATH__
CLASSPATH=$CLASSPATH:__ANOTHER_JAR_PATH__

export CLASSPATH

PARA="-Xmx758M"

java $PARA  __THE_CLASS_TO_CALL__ 


Replace the corresponding paths to your biojava distribution and the
__ANOTHER_JAR_PATH__ as needed

By the way, the JAVA platforms Eclipse or Netbeans work very fine and take
care about such details.



christophe


-----Ursprüngliche Nachricht-----
Von: James Kwong [mailto:jwk18 at csufresno.edu]
Gesendet: Freitag, 18. Februar 2005 11:21
An: biojava-l at biojava.org
Betreff: Re: [Biojava-l] location of biojava.jar on a linux system


y0 facemann,

On my linux box, this is what I did to my .bash_profile and added these 
lines in my home acct:

export CLASSPATH=.;
export 
CLASSPATH=$CLASSPATH:/home/james/biojava/biojava-live/ant-build/biojava.jar


This way, you won't have to type all the parameters each time you want 
to execute your java app.

-- 
____________________________________________________________________________
____
James Kwong

"Give a man a fish and you feed him for a day. Teach him how to fish and you
feed him for a lifetime." 
 - Lao Tzu

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