[Biojava-l] Hit_def from blast xml output?

[mark.schreiber at novartis.com]

You may need to customize your blast listeners. If you run the blast echo 
example in biojava in anger you will find out what event type that 
information is contained in. You can then listen for that event type.

http://www.biojava.org/docs/bj_in_anger/blastecho.htm

- Mark





"Michael E. Smoot" <mes5k at cs.virginia.edu>
Sent by: biojava-l-bounces at portal.open-bio.org
12/06/2005 11:00 AM

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] Hit_def from blast xml output?



Hi,

Can anyone tell me how I might get the value of the Hit_def tag from
blast xml output?  I'm following the cookbook protocol for parsing and 
extracting results 
(http://www.biojava.org/docs/bj_in_anger/BlastParser.htm).  I see a way to 
get the subject (hit) id, but not the description.


thanks,
Mike

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