[Biojava-l] cvs ant build failure

Richard HOLLAND hollandr at gis.a-star.edu.sg
Sun Dec 4 20:42:55 EST 2005


I just checked out the most recent version and found a bug in
EmptyRichAnnotation just as your compiler output indicates. I fixed it. 

But... it still won't compile, but now for a different reason. It seems
that Andreas' check-in of his structure classes over the weekend was
missing the Matrix and SingularValueDecomposition classes. Andreas can
you fix this please?

cheers,
Richard

Richard Holland
Bioinformatics Specialist
GIS extension 8199
---------------------------------------------
This email is confidential and may be privileged. If you are not the
intended recipient, please delete it and notify us immediately. Please
do not copy or use it for any purpose, or disclose its content to any
other person. Thank you.
---------------------------------------------


> -----Original Message-----
> From: biojava-l-bounces at portal.open-bio.org 
> [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of 
> Tamas Horvath
> Sent: Friday, December 02, 2005 11:09 PM
> To: biojava-l at biojava.org
> Subject: [Biojava-l] cvs ant build failure
> 
> 
> ant package-biojavaBuildfile: build.xml
> init:     [echo] Building biojava-live     [echo] Java 
> Home:/home/hota/programs/java/jdk1.5.0/jre     [echo] JUnit 
> present:                   ${junit.present}     [echo] JUnit 
> supported by Ant:          true     [echo] HSQLDB driver 
> present:           ${sqlDriver.hsqldb}
> prepare:
> prepare-biojava:
> compile-biojava:    [javac] Compiling 93 source files 
> to/data3/installs/biojava-live/ant-build/classes/biojava    
> [javac]/data3/installs/biojava-live/src/org/biojavax/EmptyRich
> Annotation.java:42:org.biojavax.EmptyRichAnnotation is not 
> abstract and does not overrideabstract method 
> getProperties(java.lang.Object) inorg.biojavax.RichAnnotation 
>    [javac] public class EmptyRichAnnotation extends 
> Unchangeable implementsRichAnnotation, Serializable {    
> [javac]        ^    [javac] Note: * uses or overrides a 
> deprecated API.    [javac] Note: Recompile with 
> -Xlint:deprecation for details.    [javac] 1 error
> BUILD FAILED/data3/installs/biojava-live/build.xml:267: 
> Compile failed; see the compilererror output for details.
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
> 



More information about the Biojava-l mailing list