[Biojava-l] PFAM parser

[Lachlan James Coin]

Hi Mark,

I have written various parsers for pfam - they are a bit hacky though.  
I can tidy them up and commit them to biojava if you like.  Are you 
accessing the pfam relational databases, or flatfiles?

Thanks,

Lachlan

>
>Message: 3
>Date: Wed, 7 Jul 2004 09:47:12 +0800
>From: mark.schreiber at group.novartis.com
>Subject: [Biojava-l] PFAM parser
>To: biojava-l at open-bio.org
>Message-ID:
>	<OF4496EE15.55A74344-ON48256ECA.0009ACFD-48256ECA.0009D10D at EU.novartis.net>
>	
>Content-Type: text/plain; charset="us-ascii"
>
>Hi All -
>
>Is anyone aware of a java parser for PFAM? Must be open-source (preferably 
>LGPL or similar) but doesn't have to be biojava.
>
>- Mark
>
>Mark Schreiber
>Principal Scientist (Bioinformatics)
>
>Novartis Institute for Tropical Diseases (NITD)
>10 Biopolis Road
>#05-01 Chromos
>Singapore 138670
>www.nitd.novartis.com
>
>phone +65 6722 2973
>fax  +65 6722 2910
>
>
>  
>