[Biojava-l] Blast Version

[DeAngelo Lampkin]

Hi George,

I've seen this before.  Check out the following link for the solution.  Basically you have to set the parser to lazy.

http://www.biojava.org/pipermail/biojava-l/2003-July/003990.html

DeAngelo

-----Original Message-----
From: biojava-l-bounces at portal.open-bio.org
[mailto:biojava-l-bounces at portal.open-bio.org]On Behalf Of Y D Sun
Sent: Tuesday, December 23, 2003 9:38 AM
To: biojava-l at biojava.org
Subject: [Biojava-l] Blast Version


Hi,

What blast version does BlastLikeSAXParser support? I encounter the
following error when running the sample code of BLAST Result Parser in
Biojava In Anger to parse blast 2.2.5 output:

org.xml.sax.SAXException: Program ncbi-blastp Version 2.2.5 is not
supported by the biojava blast-like parsing framework
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXPar
ser.java:241)
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.
java:160)

Thanks.

George

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