[Fwd: Re: [Biojava-l] Displaying many SequencePanels

Kalle Näslund kalle.naslund at genpat.uu.se
Fri Apr 23 07:59:00 EDT 2004

Maximilian Haeussler wrote:

> Kalle wrote:
> (dialog about how to render a couple of SequencePanels, if 
> SequencePanel starts throwing OutofBounds exceptions after a while...)
>> 2) if all you want is to display several sequences, There realy isnt 
>> any need for several SequencePanels. Just build an Alignment of the 
>> Sequences and use an AlignmentRenderer setup, so the SequencePanel 
>> renders all sequences 
> I have no idea what AlignmentRenderer is. There is no javadoc for it 
> and I don't understand the sourcecode. Can anyone give me a hint on 
> what an AlignmentRenderer really is, except that it renders an 
> alignment? :-)
I am pretty sure AlignmentRenderer is described in the javadocs, atleast 
my javadocs include it.
The full name is org.biojava.bio.gui.sequence.AlignmentRenderer.

To get a better understanding on how to use it, you can take a look at a 
the mailinglist archive,
http://biojava.org/pipermail/biojava-l/2003-May/003801.html gives a 
quick explanation that hopefully
should get you started.

> Max
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