[Biojava-l] reading sequences from xml files...

[Jan Würthner]

Hi,

does anyone know, if there is a biojava way to construct a Sequence object by 
reading sequence data from an XML file?

I store all the information in XML files (e.g. connecting via 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=text&db=Nucleotide&dopt=XML&uid=1234).
I know that SeqIOTools offers methods for reading sequences from files 
(fileToBioJava()), but unfortunately XML is not among the supported formats.

kind regards
Jan Würthner

-- 
Jan Würthner
Institute for Medical Microbiology
Building 22.21
Heinrich-Heine-University
Universitätsstraße 1
40225 Duesseldorf

Tel. +49 (0) 211 81 14545
URL: www.medmikro.uni-duesseldorf.de