[Biojava-l] Question about Swiss-Prot parsing
mark.schreiber at agresearch.co.nz
Sun Oct 12 02:01:07 EDT 2003
I think we could do a much better job on SwissProt parsing. Esp with some of the facilities in Biojava-live. Any volunteers with a spare hour or two up there sleaves?
From: Vasa Curcin [mailto:vc100 at doc.ic.ac.uk]
Sent: Thu 9/10/2003 12:56 a.m.
To: biojava-l at biojava.org
Subject: [Biojava-l] Question about Swiss-Prot parsing
I am parsing some Swiss-Prot files with Biojava 1.3 and need to put the
contents into Sequence Collections. It does not crash but there are two
1. Each annotation is shown as the tag, followed by a colon and then the
content, so for example AC :Q9L867. Other parsers seem to be happy to
convert the tags into meaningful description, is there some inherent
problem with SWISS-PROT?
2. Features are not recognized in most cases.
Has anyone found workarounds for these.
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