[Biojava-l] Question about Swiss-Prot parsing

Schreiber, Mark mark.schreiber at agresearch.co.nz
Sun Oct 12 02:01:07 EDT 2003

Hi -
I think we could do a much better job on SwissProt parsing. Esp with some of the facilities in Biojava-live. Any volunteers with a spare hour or two up there sleaves?
- Mark

	-----Original Message----- 
	From: Vasa Curcin [mailto:vc100 at doc.ic.ac.uk] 
	Sent: Thu 9/10/2003 12:56 a.m. 
	To: biojava-l at biojava.org 
	Subject: [Biojava-l] Question about Swiss-Prot parsing

	I am parsing some Swiss-Prot files with Biojava 1.3 and need to put the
	contents into Sequence Collections. It does not crash but there are two
	1. Each annotation is shown as the tag, followed by a colon and then the
	content, so for example AC :Q9L867. Other parsers seem to be happy to
	convert the tags into meaningful description, is there some inherent
	problem with SWISS-PROT?
	2. Features are not recognized in most cases.
	Has anyone found workarounds for these.
	Biojava-l mailing list  -  Biojava-l at biojava.org

Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.

More information about the Biojava-l mailing list