[Biojava-l] hmm profile comparison

Schreiber, Mark mark.schreiber at agresearch.co.nz
Sat Nov 1 16:29:06 EST 2003

If you want to see if two profiles have the same parameters you can get the Distributions from each state and use the DistributionTools.areEmissionSpectraEqual() method to tell you if they are the same. You should also test that the Distribution that holds the transitions is equal.
- Mark

	-----Original Message----- 
	From: Kirill Petrov [mailto:KPetrov at ics.uci.edu] 
	Sent: Sun 2/11/2003 8:44 a.m. 
	To: biojava-l at biojava.org 
	Subject: [Biojava-l] hmm profile comparison

	Hello All,
	is there a way to compare 2 existing hmm profiles using biojava api?
	Or probably there is another type of profiling system that allows
	comparisons of the profiles rather than sequences?
	Biojava-l mailing list  -  Biojava-l at biojava.org

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