[Biojava-l] How to handle the big size of FASTA file?

[Matthew Pocock]

Hi,

Java runs with an implementation specific default
memory size. You can alter this using the Xmx switch.
For example,

java -Xmx100mb com.bar.Foo

will run the com.bar.Foo class in a VM that can grow
to 100 mb in size.

Matthew

 --- hjAN <hjan at if.kaist.ac.kr> wrote: > Dear all
members,
> 
> The FASTA file of any one human chromosome is in
> general over 100Mbytes.
> Therefore, 'OutOfMemoryException' happens when I
> handle that file with Sequence interface. 
> 
> Is there any way to handle the big size of FASTA
> file? 
> 
> Sincerely,
> AN, Hyeong-Jun
> > _______________________________________________
> Biojava-l mailing list  -  Biojava-l at biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
>  

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