[Biojava-l] SeqIOTools.writeFasta method using Sequence object

[Takeshi Sasayama]

Hi,

I would really appreciate if you can provide me with the HTML for the
website. Hopefully I want to finish translation within 2 month. If there is
any conditions (ex. copyrights), please let me know.

Do you mean we should post our emails(not CC) to biojava-l at biojava.org or
some other address?

Takeshi

----- Original Message -----
From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>
Cc: "Matthew Pocock" <matthew_pocock at yahoo.co.uk>; <biojava-l at biojava.org>
Sent: Tuesday, March 18, 2003 2:04 PM
Subject: RE: [Biojava-l] SeqIOTools.writeFasta method using Sequence object


Actually someone is working on a french translation of the BioJava in
Anger pages. If you like I can provide you with the HTML for the website
if you want to do a japanese translation.

Probably we should move all these to the www.biojava.org?

- Mark


> -----Original Message-----
> From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
> Sent: Tuesday, 18 March 2003 4:37 p.m.
> To: Schreiber, Mark
> Cc: Matthew Pocock; biojava-l at biojava.org
> Subject: Re: [Biojava-l] SeqIOTools.writeFasta method using
> Sequence object
>
>
> Hi Mark,
>
> Actually, if possible, I am thinking of opening a small web
> site for introduction of BioJava especially for Japanese
> users when I learn BioJava enough to do so.  One reason is
> language problem, as I could find only one site that
> introduces how to use BioJava in Japanese. I am hoping that
> BioJava can be very useful tool as I learn more of its API
> although I am relatively new to Java (I was using C and Perl mainly).
>
> Takeshi Sasayama
>
>
> >----- Original Message -----
> >From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
> >To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>; "Matthew
> >Pocock"
> <matthew_pocock at yahoo.co.uk>
> >Cc: <biojava-l at biojava.org>
> >Sent: Tuesday, March 18, 2003 12:55 PM
> >Subject: RE: [Biojava-l] SeqIOTools.writeFasta method using Sequence
> >object
> >
>
> >Hi -
> >
> >It kind of comes from programing jargon for using something in a
> >realistic way or in a real setting rather than just testing it. Ie
> >actually doing something useful with BioJava. You could
> equally argue
> >that you might go to the webpage when you are frustrated by
> our lack of
> >documentation and need a quick solution ;-)
> >
> >- Mark
> >
> >
> >> -----Original Message-----
> >> From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
> >> Sent: Tuesday, 18 March 2003 3:52 p.m.
> >> To: Schreiber, Mark; Matthew Pocock
> >> Cc: biojava-l at biojava.org
> > Subject: Re: [Biojava-l] SeqIOTools.writeFasta method using
> >> Sequence object
> >>
> >>
> >> Hi Mark and Matthew,
> >>
> >> Thank you very much for your replies on this question and
> my previous
> >> question. I could do my job successfully using biojava1.3pre1.
> >>
> >> By the way, I have been wondering why the name of the
> cookbook page
> >> is "BioJava in Anger". Is there any reason for that?
> >>
> >> Takeshi Sasayama
> >>
> >>
> >> ----- Original Message -----
> >> From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
> >> To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>;
> >> <biojava-l at biojava.org>
> >> Sent: Tuesday, March 18, 2003 6:55 AM
> >> Subject: RE: [Biojava-l] SeqIOTools.writeFasta method
> using Sequence
> >> object
> >>
> >>
> >> Hi -
> >>
> >> That method is a recent addition to BioJava, you will need to get
> >> biojava1.3pre1 from the download site or BioJava live from the CVS
> >> server.
> >>
> >> - Mark
> >>
> >> > -----Original Message-----
> >> > From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
> >> > Sent: Monday, 17 March 2003 7:31 p.m.
> >> > To: biojava-l at biojava.org
> >> > Subject: [Biojava-l] SeqIOTools.writeFasta method using Sequence
> >> > object
> >> >
> >> >
> >> > Hi,
> >> >
> >> > I wrote a script(using BioJava 1.22) which reads sequences from
> >> > multiple GenBank format files and write part of them in
> >> FASTA format,
> >> > using
> >> > SeqIOTools.writeFasta() method. In "BioJava In Anger", it
> >> is written
> >> > that writeFasta can be used for printing a single sequence
> >> like this:
> >> > writeFasta(System.out, seq1), but I had an err in this way.
> >> I looked
> >> > for JavaDoc and Biojava src files but there seems to be no
> >> signature
> >> > using Sequence object as 2nd argument.
> >> >
> >> > Does anyone have suggestion on this?
> >> > Also any information is welcome.
> >> > Thanks
> >> >
> >> > Takeshi Sasayama
> >> >
> >> >
> >> > _______________________________________________
> >> > Biojava-l mailing list  -  Biojava-l at biojava.org
> >> > http://biojava.org/mailman/listinfo/biojava-l
> >> >
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