[Biojava-l] SeqIOTools.writeFasta method using Sequence object

[Takeshi Sasayama]

Hi Mark,

Actually, if possible, I am thinking of opening a small web site for
introduction of BioJava especially for Japanese users when I learn BioJava
enough to do so.  One reason is language problem, as I could find only one
site that introduces how to use BioJava in Japanese. I am hoping that
BioJava can be very useful tool as I learn more of its API although I am
relatively new to Java (I was using C and Perl mainly).

Takeshi Sasayama


>----- Original Message -----
>From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>; "Matthew Pocock"
<matthew_pocock at yahoo.co.uk>
>Cc: <biojava-l at biojava.org>
>Sent: Tuesday, March 18, 2003 12:55 PM
>Subject: RE: [Biojava-l] SeqIOTools.writeFasta method using Sequence object
>

>Hi -
>
>It kind of comes from programing jargon for using something in a
>realistic way or in a real setting rather than just testing it. Ie
>actually doing something useful with BioJava. You could equally argue
>that you might go to the webpage when you are frustrated by our lack of
>documentation and need a quick solution ;-)
>
>- Mark
>
>
>> -----Original Message-----
>> From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
>> Sent: Tuesday, 18 March 2003 3:52 p.m.
>> To: Schreiber, Mark; Matthew Pocock
>> Cc: biojava-l at biojava.org
> Subject: Re: [Biojava-l] SeqIOTools.writeFasta method using
>> Sequence object
>>
>>
>> Hi Mark and Matthew,
>>
>> Thank you very much for your replies on this question and my
>> previous question. I could do my job successfully using
>> biojava1.3pre1.
>>
>> By the way, I have been wondering why the name of the
>> cookbook page is "BioJava in Anger". Is there any reason for that?
>>
>> Takeshi Sasayama
>>
>>
>> ----- Original Message -----
>> From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>> To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>;
>> <biojava-l at biojava.org>
>> Sent: Tuesday, March 18, 2003 6:55 AM
>> Subject: RE: [Biojava-l] SeqIOTools.writeFasta method using
>> Sequence object
>>
>>
>> Hi -
>>
>> That method is a recent addition to BioJava, you will need to
>> get biojava1.3pre1 from the download site or BioJava live
>> from the CVS server.
>>
>> - Mark
>>
>> > -----Original Message-----
>> > From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
>> > Sent: Monday, 17 March 2003 7:31 p.m.
>> > To: biojava-l at biojava.org
>> > Subject: [Biojava-l] SeqIOTools.writeFasta method using Sequence
>> > object
>> >
>> >
>> > Hi,
>> >
>> > I wrote a script(using BioJava 1.22) which reads sequences from
>> > multiple GenBank format files and write part of them in
>> FASTA format,
>> > using
>> > SeqIOTools.writeFasta() method. In "BioJava In Anger", it
>> is written
>> > that writeFasta can be used for printing a single sequence
>> like this:
>> > writeFasta(System.out, seq1), but I had an err in this way.
>> I looked
>> > for JavaDoc and Biojava src files but there seems to be no
>> signature
>> > using Sequence object as 2nd argument.
>> >
>> > Does anyone have suggestion on this?
>> > Also any information is welcome.
>> > Thanks
>> >
>> > Takeshi Sasayama
>> >
>> >
>> > _______________________________________________
>> > Biojava-l mailing list  -  Biojava-l at biojava.org
>> > http://biojava.org/mailman/listinfo/biojava-l
>> >
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