[Biojava-l] bytecode jar biojava-live build wierdness...

[DeAngelo Lampkin]

It's still appears to be broken, but at least it's broken in new ways!  It's amazing what variability in error messages can do for a programmer's psychology. :)

Now I'm getting the following error message, which seems to still be in the bytecode library.  Updated/cleaned/recheckedout everything
and still get the error.  Any ideas?

--------------------------------------------------------------------------------------------------
compile:
    [javac] Compiling 1069 source files to /home/dlampkin/biojava-live/ant-build/classes/main
    [javac] /home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPCompiler.java:765: make_pop2(boolean) in org.biojava.utils.bytecode.ByteCode cannot be applied to ()
    [javac]           useOldMax.add( ByteCode.make_pop2());
    [javac]                                  ^
    [javac] /home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPCompiler.java:1033: make_pop2(boolean) in org.biojava.utils.bytecode.ByteCode cannot be applied to ()
    [javac]             ifSmallerThanMax.add( ByteCode.make_pop2());
    [javac]                                           ^
    [javac] /home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPCompiler.java:1085: make_pop2(boolean) in org.biojava.utils.bytecode.ByteCode cannot be applied to ()
    [javac]             scoreIsNaN.add( ByteCode.make_pop2());
    [javac]                                     ^
    [javac] /home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPCompiler.java:1324: make_pop2(boolean) in org.biojava.utils.bytecode.ByteCode cannot be applied to ()
    [javac]             ifSmallerThanMax.add( ByteCode.make_pop2 ());
    [javac]                                           ^
    [javac] /home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPCompiler.java:1380: make_pop2(boolean) in org.biojava.utils.bytecode.ByteCode cannot be applied to ()
    [javac]             scoreIsNaN.add( ByteCode.make_pop2());
    [javac]             
--------------------------------------------------------------------------------------------------                        ^

-DeAngelo

-----Original Message-----
From: Matthew Pocock [mailto:matthew_pocock at yahoo.co.uk]
Sent: Monday, July 14, 2003 3:12 AM
To: Schreiber, Mark
Cc: David Huen; DeAngelo Lampkin; Biojava-L (E-mail)
Subject: Re: [Biojava-l] bytecode jar biojava-live build wierdness...


Sorry. Check out either bytecode or biojava-live now, and things should 
be back to goodness.

Matthew

Schreiber, Mark wrote:
> Bad Matthew, breaking CVS again :)
> 
> 
>>-----Original Message-----
>>From: David Huen [mailto:smh1008 at cus.cam.ac.uk] 
>>Sent: Saturday, 12 July 2003 1:03 p.m.
>>To: DeAngelo Lampkin
>>Cc: Biojava-L (E-mail)
>>Subject: Re: [Biojava-l] bytecode jar biojava-live build wierdness...
>>
>>
>>On Fri, 11 Jul 2003, DeAngelo Lampkin wrote:
>>
>>
>>>Anyone ever get the following error while building biojava-live?  I 
>>>tried updating with the new bytecode jar file to see if 
>>
>>that would help, but nope, no such luck.
>>
>>--------------------------------------------------------------
>>--------------------------------------------------------------
>>--------------------------------------------------------------
>>----------
>>
>>>    [javac] Compiling 659 source files to 
>>
>>/home/dlampkin/biojava-live/ant-build/classes/main
>>
>>>    [javac] 
>>
>>/home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio
> 
> /seq/filter/WalkerFactory.java:211: cannot resolve symbol
> 
>>>    [javac] symbol  : method forMethod (java.lang.reflect.Method)
>>>    [javac] location: class 
>>
>>org.biojava.utils.bytecode.IntrospectedCodeClass
>>
>>>    [javac]             CodeMethod m_getFilter = 
>>
>>IntrospectedCodeClass.forMethod(m);
>>
>>>    [javac]                                                 
>>
>>          ^
>>
>>>    [javac] 
>>
>>/home/dlampkin/biojava-live/ant-build/src/main/org/biojava/bio
> 
> /seq/filter/WalkerFactory.java:275: cannot resolve symbol
> 
>>>    [javac] symbol  : method forMethod (java.lang.reflect.Method)
>>>    [javac] location: class 
>>
>>org.biojava.utils.bytecode.IntrospectedCodeClass
>>
>>>    [javac]         CodeMethod ourMeth = 
>>
>>IntrospectedCodeClass.forMethod(meth);
>>
>>>    [javac]                                                   ^
>>>
>>
>>--------------------------------------------------------------
>>--------------------------------------------------------------
>>--------------------------------------------------------------
>>----------
>>
>>>
>>>I believe this particular error overdrew my account in the Sanity 
>>>Fund.  I'm in the red.  WAY in the red.  Yes, I'll be sure 
>>
>>to make the 
>>
>>>T-rex's teeth extra sharp.  And they won't be mini-Rexes either...
>>
>>Congratulations, you are the proud winner of a workaround. Do 
>>a cvs update to get workaround until the author fixes it.
>>
>>Problem was previously reported here:- 
>>http://biojava.org/pipermail/biojava-dev/2003-July/000702.html
> 
> 
> 
> 
> 
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