[Biojava-l] Finding Annotation keys for parsed reports and inconsistent Blast parsing errors...

[DeAngelo Lampkin]

Is there some place that lists all the keys that are stored in Annotations for various types of reports that are parsed (specifically BLAST in my case)? Or are we stuck with manually going in,? 
listing them all and "seeing before trying".  Say it ain't so! :)  

Also, I've been getting inconsistent errors when parsing Blast reports. Specifically, I get an error when I try parsing a BLAST report using the BlastParser program given in Biojava in Anger (nice title BTW) while the Blast2HTML parser in the demos directory (also using the BlastLikeSaxParser) runs perfectly fine.  So the problem is probably actually in the ContentHandler or the SeqSimilarityAdapter.  Anyway, the error that the BlastParser program returns is:

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"org.xml.sax.SAXException: Program ncbi-blastp Version 2.2.6 is not supported by the biojava blast-like parsing framework
        at org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXParser.java:241)
        at org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.java:160)
        at BlastParser.main(BlastParser.java:43)"
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Any help is greatly appreciated!

Thanks,

DeAngelo Lampkin
Scientific Programmer
Xencor
626 - 737 - 8083