[Biojava-l] Ensembl gene parsing

[Matthew Pocock]

Ewan Birney wrote:
> (c) If you don't like Perl ( ... this is the biojava mailing list...) then 
> there is a pretty complete and stable Java binding to Ensembl - it doesn't 
> use BioJava - it is more just a vanilla Java binding to Ensembl. Craig 
> melsopp is the lead on that. The web page is
> 
> http://www.ensembl.org/java/


And also the biojava-ensembl may do what you want 
(http://biojava.org/download/biojava-ensembl/) - it's the code that 
backs the ensembl DAS server. To make this work, you need a JDBC url to 
point it at. I think ensembl provides a public sql server.

Matthew