[Biojava-l] scoring matrices

suyee leesuyee@yahoo.com
Thu, 16 Jan 2003 17:28:04 -0800 (PST)

  can anyone tell me why the scoring matrices used in ClustalW
is PAM 350 and Blosum 30 not Pam250 or Blosum 62 which are more
popular then PAM 350 and Blosum 30. And anyone know where i can
read more on Fast & Slow Pairwise alignment on ClustalW.



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