[Biojava-l] BlastLikeAlignment with BlastLikeSearchBuilder

Markus Roth Markus.Roth@tg.fh-giessen.de
Mon, 13 Jan 2003 10:36:02 +0100

hi there,
I've been trying to create SeqSimilaritySearchResults from SAX
with the BlastLikeSearchBuilder. Is there any possibility to get
the MatchConsensus from the Alignment ?
or is there nothing about the Consensus in the SeqSimilaritySearchHit 
(SeqSimilaritySearchSubHit) ?
I found something like this in  Blast2HTMLHandler --> BlastLikeAlignment,
how can I get this with the SeqSimilarityAdapter ?