[Biojava-l] Re: Biojava-l Digest, Vol 8, Issue 6

wux at mail.cbi.pku.edu.cn wux at mail.cbi.pku.edu.cn
Tue Aug 12 11:21:30 EDT 2003


Dear biojava-l-request:

¡¡¡¡Hi, Mark, We are the center of bioinformatics of Peking University (Beijing,P.R. China) which is national node of 
EMBnet.  I would like to do  the chinese version of biojava in Anger if you agree .  

======= 2003-08-11 ÄúÔÚÀ´ÐÅÖÐдµÀ£º=======

>Send Biojava-l mailing list submissions to
>	biojava-l at biojava.org
>
>To subscribe or unsubscribe via the World Wide Web, visit
>	http://biojava.org/mailman/listinfo/biojava-l
>or, via email, send a message with subject or body 'help' to
>	biojava-l-request at biojava.org
>
>You can reach the person managing the list at
>	biojava-l-owner at biojava.org
>
>When replying, please edit your Subject line so it is more specific
>than "Re: Contents of Biojava-l digest..."
>
>
>Today's Topics:
>
>   1. RE: problems installing biojava on Windows 2000 (Matthew Pocock)
>   2. biojava-acedb (Suman Kanuganti)
>   3. Re: biojava-acedb (Suman Kanuganti)
>   4. Announcing: BJIA in Japanese (Schreiber, Mark)
>   5. RE: Re: biojava-acedb (Francois Pepin)
>   6. Running apps with Java (Schreiber, Mark)
>   7. Re: Running apps with Java (Thomas Down)
>   8. Re: Running apps with Java (Francois Pepin)
>   9. Re: Running apps with Java (Patrick McConnell)
>
>
>----------------------------------------------------------------------
>
>Message: 1
>Date: Sun, 10 Aug 2003 18:43:48 +0100 (BST)
>From: Matthew Pocock <matthew_pocock at yahoo.co.uk>
>Subject: RE: [Biojava-l] problems installing biojava on Windows 2000
>To: David Millis <dmillis at mindspring.com>,	"'Schreiber, Mark'"
>	<mark.schreiber at agresearch.co.nz>
>Cc: biojava-l at biojava.org
>Message-ID: <20030810174348.92714.qmail at web14915.mail.yahoo.com>
>Content-Type: text/plain; charset=iso-8859-1
>
>Since 1.4 seems to come bundled with net-beans now,
>should we update the docs to say how to get biojava
>working in netbeans? Love it or hate it, everyone is
>going to have it.
>
>Matthew
>
> --- David Millis <dmillis at mindspring.com> wrote: >
>Mark -
>> 
>> Thanks for your response to my message. 
>> 
>> I am using the netBeans 3.5 IDE for editing and
>> compiling Java files. I
>> have found that if I mount the
>> biojava-1.30-jdk14.jar archive inside the
>> IDE, the Java compiler is able to find all the files
>> it needs, even if I
>> don't edit the Windows PATH variable. I have finally
>> been able to get
>> one of the example from "BioJava In Anger" to
>> compile without any
>> errors. This is so much easier than trying to get
>> the PATH variable set
>> exactly right in Windows that I will just use this
>> strategy.
>> 
>> David Millis.
>> 
>> -----Original Message-----
>> From: Schreiber, Mark
>> [mailto:mark.schreiber at agresearch.co.nz] 
>> Sent: Thursday, August 07, 2003 5:44 PM
>> To: David Millis; biojava-l at biojava.org
>> Subject: RE: [Biojava-l] problems installing biojava
>> on Windows 2000
>> 
>> Hi -
>> 
>> Your class path looks OK but you can check that it
>> has actually been set
>> by running set command with no arguments from the
>> command prompt. If the
>> CLASSPATH variable is not displaying properly there
>> then it is not
>> properly set (possibly incorrect syntax).
>> 
>> If you are running BioJava 1.3 or less you will also
>> need the
>> Jakarta-Regexp jar on your path.
>> 
>> - Mark
>> 
>> 
>> -----Original Message-----
>> From: David Millis [mailto:dmillis at mindspring.com] 
>> Sent: Friday, 8 August 2003 6:04 a.m.
>> To: biojava-l at biojava.org
>> Subject: [Biojava-l] problems installing biojava on
>> Windows 2000
>> 
>> 
>> 
>> Hello,
>> 
>> I am new to using biojava. I am trying to install
>> biojava on a PC
>> running Windows 2000 Professional. I am using Java 2
>> SDK version 1.4.2.
>> I have downloaded the files in the "binaries"
>> directory in the download
>> area of the biojava server to the directory
>> "C:\biojava" on my computer.
>> I have added the 
>> string
>> 
>> 
>>
>"C:\biojava;C:\biojava\biojava.jar;C:\biojava\xerces.jar;C:\biojava\byte
>> code.jar;" 
>> 
>> to my PATH variable. When I try to compile one of
>> the simple demo files,
>> like AlphabetExample.java, I get error messages
>> saying that the packages
>> "org.biojava.bio.symbol.*" and
>> "org.biojava.bio.seq.*" can't be found.
>> Is there something else I have to do to get the
>> biojava files installed
>> correctly?
>> 
>> Thanks -
>> David Millis.
>> 
>> _______________________________________________
>> Biojava-l mailing list  -  Biojava-l at biojava.org
>> http://biojava.org/mailman/listinfo/biojava-l 
>
>________________________________________________________________________
>Want to chat instantly with your online friends?  Get the FREE Yahoo!
>Messenger http://uk.messenger.yahoo.com/
>
>------------------------------
>
>Message: 2
>Date: Sun, 10 Aug 2003 15:13:19 -0700 (PDT)
>From: Suman Kanuganti <bioinformatics4suman at yahoo.com>
>Subject: [Biojava-l] biojava-acedb
>To: biojava-l at biojava.org
>Message-ID: <20030810221320.8535.qmail at web20702.mail.yahoo.com>
>Content-Type: text/plain; charset=us-ascii
>
>Is there any jar for acedb-biojava for running its
>programs. I downloaded biojava-acedb.tar but couldnt
>figure how to build corresponding .jar to add it in my
>path.
>
>Could any one tell me about this?
>
>Suman K
>
>__________________________________
>Do you Yahoo!?
>Yahoo! SiteBuilder - Free, easy-to-use web site design software
>http://sitebuilder.yahoo.com
>
>------------------------------
>
>Message: 3
>Date: Sun, 10 Aug 2003 15:40:06 -0700 (PDT)
>From: Suman Kanuganti <bioinformatics4suman at yahoo.com>
>Subject: [Biojava-l] Re: biojava-acedb
>To: biojava-l at biojava.org
>Message-ID: <20030810224006.59350.qmail at web20713.mail.yahoo.com>
>Content-Type: text/plain; charset=us-ascii
>
>I figured out something that I need to use ant to
>build the acedb-biojava, with the build.xml provided
>by the package. Now the problem:
>
>[newton at newtondell bin]$ ant -buildfile
>~/biojava-acedb/build.xml
>Buildfile: /home/newton/biojava-acedb/build.xml
>
>init:
>
>prepare:
>
>BUILD FAILED
>file:/home/newton/biojava-acedb/build.xml:61:
>Directory /home/newton/biojava-acedb/ant-build
>creation was not successful for an unknown reason
>
>Total time: 1 second
>
>Any suggestions,
>Suman K
>
>
>--- Suman Kanuganti <bioinformatics4suman at yahoo.com>
>wrote:
>> Is there any jar for acedb-biojava for running its
>> programs. I downloaded biojava-acedb.tar but couldnt
>> figure how to build corresponding .jar to add it in
>> my
>> path.
>> 
>> Could any one tell me about this?
>> 
>> Suman K
>> 
>> __________________________________
>> Do you Yahoo!?
>> Yahoo! SiteBuilder - Free, easy-to-use web site
>> design software
>> http://sitebuilder.yahoo.com
>> 
>
>
>=====
>Suman K
>BioInformatics Associate,
>Genomics Research,
>University of Missouri - Columbia.
>
>__________________________________
>Do you Yahoo!?
>Yahoo! SiteBuilder - Free, easy-to-use web site design software
>http://sitebuilder.yahoo.com
>
>------------------------------
>
>Message: 4
>Date: Mon, 11 Aug 2003 11:30:34 +1200
>From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>Subject: [Biojava-l] Announcing: BJIA in Japanese
>To: <biojava-l at biojava.org>, <biojava-dev at biojava.org>
>Message-ID:
>	<AF026AF0FF4B054590228FD1F1DE5165011BA5F4 at inbox.agresearch.co.nz>
>Content-Type: text/plain;	charset="us-ascii"
>
>Hello all,
>
>The unexpectidly popular biojava in anger site has now been translated
>into Japanese. A big thanks to the Translators Takeshi Sasayama and
>Kentaro Sugino and possibly others, let me know if I haven't credited
>every one.
>
>Just follow the link off the main page:
>http://www.biojava.org/docs/bj_in_anger/index.htm.  This site requires
>you to have the font MS Michu to display Kanji but you can easily get it
>off the web. There is also a link to a French version (by Sylvain
>Foisey)  on the main page. Anyone want to do a Chinese or Spanish
>version so we can cover 90 of the world?
>
>I have also recently added a tutorial on the use of Edit objects in the
>Basic Sequence Manipulaton section
>(http://www.biojava.org/docs/bj_in_anger/edit.htm)
>
>I'm always open to suggestions for or donations of new tutorials,
>comments and bugfixes.
>
>Enjoy
>
>- Mark
>
>Mark Schreiber PhD
>AgResearch Joint Bioinformatics Institute
>School of Biological Sciences
>Universtity of Auckland
>3a Symonds St
>Private Bag 92-019 Auckland New Zealand
> 
>PH:   +64 9 3737599 ext 84290
>FAX:  +64 9 3737414
>
>
>=======================================================================
>Attention: The information contained in this message and/or attachments
>from AgResearch Limited is intended only for the persons or entities
>to which it is addressed and may contain confidential and/or privileged
>material. Any review, retransmission, dissemination or other use of, or
>taking of any action in reliance upon, this information by persons or
>entities other than the intended recipients is prohibited by AgResearch
>Limited. If you have received this message in error, please notify the
>sender immediately.
>=======================================================================
>
>
>------------------------------
>
>Message: 5
>Date: Sun, 10 Aug 2003 19:53:43 -0400
>From: "Francois Pepin" <fpepin at cs.mcgill.ca>
>Subject: RE: [Biojava-l] Re: biojava-acedb
>To: "'Suman Kanuganti'" <bioinformatics4suman at yahoo.com>,
>	<biojava-l at biojava.org>
>Message-ID: <006101c35f9a$a5262a50$e0abfea9 at hermes>
>Content-Type: text/plain;	charset="us-ascii"
>
>Hi Suman,
>
>My guess is that you have a permission problem somewhere, or that your
>disk is full or something similar.
>
>Try to see if you can create that directory by yourself.
>
>The error seems to be about being able to create the directory itself.
>It happened before any of the code was touched for compilation, so the
>problem would not be with the code, but with the machine that you're
>building on.
>
>Francois
>
>-----Original Message-----
>From: biojava-l-bounces at biojava.org
>[mailto:biojava-l-bounces at biojava.org] On Behalf Of Suman Kanuganti
>Sent: 10 aout, 2003 18:40
>To: biojava-l at biojava.org
>Subject: [Biojava-l] Re: biojava-acedb
>
>
>I figured out something that I need to use ant to
>build the acedb-biojava, with the build.xml provided
>by the package. Now the problem:
>
>[newton at newtondell bin]$ ant -buildfile ~/biojava-acedb/build.xml
>Buildfile: /home/newton/biojava-acedb/build.xml
>
>init:
>
>prepare:
>
>BUILD FAILED
>file:/home/newton/biojava-acedb/build.xml:61:
>Directory /home/newton/biojava-acedb/ant-build
>creation was not successful for an unknown reason
>
>Total time: 1 second
>
>Any suggestions,
>Suman K
>
>
>--- Suman Kanuganti <bioinformatics4suman at yahoo.com>
>wrote:
>> Is there any jar for acedb-biojava for running its
>> programs. I downloaded biojava-acedb.tar but couldnt
>> figure how to build corresponding .jar to add it in
>> my
>> path.
>> 
>> Could any one tell me about this?
>> 
>> Suman K
>> 
>> __________________________________
>> Do you Yahoo!?
>> Yahoo! SiteBuilder - Free, easy-to-use web site
>> design software
>> http://sitebuilder.yahoo.com
>> 
>
>
>=====
>Suman K
>BioInformatics Associate,
>Genomics Research,
>University of Missouri - Columbia.
>
>__________________________________
>Do you Yahoo!?
>Yahoo! SiteBuilder - Free, easy-to-use web site design software
>http://sitebuilder.yahoo.com
>_______________________________________________
>Biojava-l mailing list  -  Biojava-l at biojava.org
>http://biojava.org/mailman/listinfo/biojava-l
>
>
>------------------------------
>
>Message: 6
>Date: Mon, 11 Aug 2003 11:59:46 +1200
>From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>Subject: [Biojava-l] Running apps with Java
>To: <biojava-l at biojava.org>
>Message-ID:
>	<AF026AF0FF4B054590228FD1F1DE5165011BA5F6 at inbox.agresearch.co.nz>
>Content-Type: text/plain;	charset="us-ascii"
>
>Hi -
>
>I know this has come up a few times on the list but I'm not sure we have
>ever come to any agreement on it so I'm going to raise it again as I
>think it is important.
>
>What is the best way to invoke a native bioinformatics program in Java.
>People have reported that controlling processes directly has been patchy
>in Java, is this still the case or have JVMs evolved? If not then what
>is the alternative? Wrapping the program in a perl or python webservice?
>If this was the prefered method then we could borrow quite a bit from
>the Bio::Pipeline::Runnable package.
>
>Ultimately the reason for asking is that J2EE (particularly the message
>driven beans) would make for a pretty good pipelining system (drawing on
>all its inherent transaction control, roll back etc). My expectation
>would be that biojava could exist server side to provide parsing support
>and possibly connection to BioSQL although J2EE could also do that
>without biojava. It would also be useful in local EJBs (no serialization
>slowdown) to do some manipulation of sequence data. The only missing
>component is some kind of BioRunnable that could reliably kick off the
>jobs and capture the output for parsing with the biojava parsers.
>
>Any thoughts?
>
>- Mark
>
>
>Mark Schreiber PhD
>AgResearch Joint Bioinformatics Institute
>School of Biological Sciences
>Universtity of Auckland
>3a Symonds St
>Private Bag 92-019 Auckland New Zealand
> 
>PH:   +64 9 3737599 ext 84290
>FAX:  +64 9 3737414
>
>
>=======================================================================
>Attention: The information contained in this message and/or attachments
>from AgResearch Limited is intended only for the persons or entities
>to which it is addressed and may contain confidential and/or privileged
>material. Any review, retransmission, dissemination or other use of, or
>taking of any action in reliance upon, this information by persons or
>entities other than the intended recipients is prohibited by AgResearch
>Limited. If you have received this message in error, please notify the
>sender immediately.
>=======================================================================
>
>
>------------------------------
>
>Message: 7
>Date: Mon, 11 Aug 2003 09:11:08 +0100
>From: Thomas Down <td2 at sanger.ac.uk>
>Subject: Re: [Biojava-l] Running apps with Java
>To: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>Cc: biojava-l at biojava.org
>Message-ID: <20030811081108.GA78872 at jabba.sanger.ac.uk>
>Content-Type: text/plain; charset=us-ascii
>
>On Mon, Aug 11, 2003 at 11:59:46AM +1200, Schreiber, Mark wrote:
>> 
>> What is the best way to invoke a native bioinformatics program in Java.
>> People have reported that controlling processes directly has been patchy
>> in Java, is this still the case or have JVMs evolved? If not then what
>> is the alternative? Wrapping the program in a perl or python webservice?
>> If this was the prefered method then we could borrow quite a bit from
>> the Bio::Pipeline::Runnable package.
>
>I think it *is* possible to write good-quality wrappers to
>external tools in Java: it's just that the Runtime.exec
>APIs are substantially more complicated than the equivalents
>in $PREFERRED_SCRIPTING_LANGUAGE.  If you're using stdin/stdout/stderr
>on the external program, you need to make heavy use of Threads
>in Java.  I think that's the main barrier to entry.
>
>A lot of these issues could probably be addressed by something
>like:
>
>public class ExecTools {
>    /**
>     * Execute an external program and wait for it to complete.
>     *
>     * @param args the command line to run.
>     * @param input some data to feed to the program's standard input,
>     *              or null if no data.
>     * @param stdout a StringBuffer to receive the program's output,
>     *               or null to ignore them.
>     * @param stderr a StringBuffer to receive the program's error
>     *               stream, or null to ignore this.
>     * @returns the program's return code.
>     */
>
>    public static int exec(
>        String[] args,
>        String input,
>        StringBuffer stdout,
>        StringBuffer stderr
>    );
>}
>
>All the necessary thread code for most practical uses of exec could
>be hidden in there.  I might code this up this afternoon if nobody
>objects -- it's code I write reasonably regularly, and the API above
>would certainly save me time.  Anyone else?
>
>
>As for the web service approach, AppLap might be relevant:
>
>     http://industry.ebi.ac.uk/applab/
>
>Thomas.
>
>------------------------------
>
>Message: 8
>Date: Mon, 11 Aug 2003 10:03:55 -0400 (EDT)
>From: Francois Pepin <fpepin at cs.mcgill.ca>
>Subject: Re: [Biojava-l] Running apps with Java
>To: biojava-l at biojava.org
>Message-ID: <Pine.GSO.4.44.0308111003050.6867-100000 at mimi>
>Content-Type: TEXT/PLAIN; charset=US-ASCII
>
>I have code that did that, but it wasn't reliable enough to use like
>that. For unknown reasons, there are programs that I couldn't call at
>all.
>
>The only reliable method that I found was to write a one-liner shell
>script to be executed by sh, but this is an ugly, ugly hack.
>
>The grabbing of stdin and stdout wasn't working as advertised either.
>
>This is with Linux. I don't know about Windows, but I'm sure I'm not the
>only one who needs to call Linux apps.
>
>Maybe like Mark said it got more reliable with 1.4.
>
>Personally I'd much rather use a system like that than to have to depend
>on Perl or Python to do it.
>
>Francois
>
>On Mon, 2003-08-11 at 04:11, Thomas Down wrote:
>> On Mon, Aug 11, 2003 at 11:59:46AM +1200, Schreiber, Mark wrote:
>> >
>> > What is the best way to invoke a native bioinformatics program in
>Java.
>> > People have reported that controlling processes directly has been
>patchy
>> > in Java, is this still the case or have JVMs evolved? If not then what
>> > is the alternative? Wrapping the program in a perl or python
>webservice?
>> > If this was the prefered method then we could borrow quite a bit from
>> > the Bio::Pipeline::Runnable package.
>>
>> I think it *is* possible to write good-quality wrappers to
>> external tools in Java: it's just that the Runtime.exec
>> APIs are substantially more complicated than the equivalents
>> in $PREFERRED_SCRIPTING_LANGUAGE. If you're using stdin/stdout/stderr
>> on the external program, you need to make heavy use of Threads
>> in Java. I think that's the main barrier to entry.
>>
>> A lot of these issues could probably be addressed by something
>> like:
>>
>> public class ExecTools {
>> /**
>> * Execute an external program and wait for it to complete.
>> *
>> * @param args the command line to run.
>> * @param input some data to feed to the program's standard input,
>> * or null if no data.
>> * @param stdout a StringBuffer to receive the program's output,
>> * or null to ignore them.
>> * @param stderr a StringBuffer to receive the program's error
>> * stream, or null to ignore this.
>> * @returns the program's return code.
>> */
>>
>> public static int exec(
>> String[] args,
>> String input,
>> StringBuffer stdout,
>> StringBuffer stderr
>> );
>> }
>>
>> All the necessary thread code for most practical uses of exec could
>> be hidden in there. I might code this up this afternoon if nobody
>> objects -- it's code I write reasonably regularly, and the API above
>> would certainly save me time. Anyone else?
>>
>>
>> As for the web service approach, AppLap might be relevant:
>>
>> http://industry.ebi.ac.uk/applab/
>>
>> Thomas.
>> _______________________________________________
>> Biojava-l mailing list - Biojava-l at biojava.org
>> http://biojava.org/mailman/listinfo/biojava-l
>
>
>------------------------------
>
>Message: 9
>Date: Mon, 11 Aug 2003 10:28:14 -0400
>From: "Patrick McConnell" <MCCon012 at mc.duke.edu>
>Subject: Re: [Biojava-l] Running apps with Java
>To: biojava-l at biojava.org
>Message-ID:
>	<OF0C5E9D1F.6A76EA34-ON85256D7F.004ED3D3-85256D7F.004F7D5B at notes.duke.edu>
>	
>Content-Type: text/plain; charset=us-ascii
>
>
>
>
>
>
>We do something similar, and I have not ran into any problems.  The biggest
>problem is when stdout and stderr are not handled in separate threads.
>
>Personally, I would like to see API's developed for specific applications.
>Something ilke:
>
>    public static int execNCBIBlast(
>        String executable,
>        String inputFile,
>        String outputFile
>        String program,
>        String database,
>        String input,
>        StringBuffer stdout,
>        StringBuffer stderr
>    );
>
>Or, even better would be some sort of Parameters class to encapsulate all
>those parameters, providing optional parameters.  Then, you could do
>something like this:
>
>   NCBIBlastParameters params = new NCBIBlastParameters();
>   params.addParameter("p", "blastn");
>   params.addParameter("d", "nt");
>   params.addParameter("m", "7");
>   StringBuffer outputXML = new StringBuffer();
>   int success = NCBIBlast.exec(
>     "c:\\blast\\blastall",
>     params,
>     inputFasta,
>     outputXML,
>     null
>   );
>   System.out.println(outputXML);
>
>I think this would be more convenient to people for developing
>applications.  If you wanted to get fancy, you could have the exec method
>throw an exception for missing or invalid parameters.  Perhaps a method to
>turn off this parameter checking would also be necessary.
>
>-Patrick
>
>
>
>
>
>Thomas Down <td2 at sanger.ac.uk>@biojava.org on 08/11/2003 04:11:08 AM
>
>Sent by:    biojava-l-bounces at biojava.org
>
>
>To:    "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
>cc:    biojava-l at biojava.org
>
>Subject:    Re: [Biojava-l] Running apps with Java
>
>On Mon, Aug 11, 2003 at 11:59:46AM +1200, Schreiber, Mark wrote:
>>
>> What is the best way to invoke a native bioinformatics program in Java.
>> People have reported that controlling processes directly has been patchy
>> in Java, is this still the case or have JVMs evolved? If not then what
>> is the alternative? Wrapping the program in a perl or python webservice?
>> If this was the prefered method then we could borrow quite a bit from
>> the Bio::Pipeline::Runnable package.
>
>I think it *is* possible to write good-quality wrappers to
>external tools in Java: it's just that the Runtime.exec
>APIs are substantially more complicated than the equivalents
>in $PREFERRED_SCRIPTING_LANGUAGE.  If you're using stdin/stdout/stderr
>on the external program, you need to make heavy use of Threads
>in Java.  I think that's the main barrier to entry.
>
>A lot of these issues could probably be addressed by something
>like:
>
>public class ExecTools {
>    /**
>     * Execute an external program and wait for it to complete.
>     *
>     * @param args the command line to run.
>     * @param input some data to feed to the program's standard input,
>     *              or null if no data.
>     * @param stdout a StringBuffer to receive the program's output,
>     *               or null to ignore them.
>     * @param stderr a StringBuffer to receive the program's error
>     *               stream, or null to ignore this.
>     * @returns the program's return code.
>     */
>
>    public static int exec(
>        String[] args,
>        String input,
>        StringBuffer stdout,
>        StringBuffer stderr
>    );
>}
>
>All the necessary thread code for most practical uses of exec could
>be hidden in there.  I might code this up this afternoon if nobody
>objects -- it's code I write reasonably regularly, and the API above
>would certainly save me time.  Anyone else?
>
>
>As for the web service approach, AppLap might be relevant:
>
>     http://industry.ebi.ac.uk/applab/
>
>Thomas.
>_______________________________________________
>Biojava-l mailing list  -  Biojava-l at biojava.org
>http://biojava.org/mailman/listinfo/biojava-l
>
>
>
>
>
>------------------------------
>
>_______________________________________________
>Biojava-l mailing list  -  Biojava-l at biojava.org
>http://biojava.org/mailman/listinfo/biojava-l
>
>
>End of Biojava-l Digest, Vol 8, Issue 6
>***************************************
>.

= = = = = = = = = = = = = = = = = = = =
	               
			 
              Best wishes for you!
¡¡¡¡¡¡¡¡¡¡¡¡              
 				          Yours faithfully,
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡     wux
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡     wux at mail.cbi.pku.edu.cn
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡    2003-08-12
*****************************************************
WuXin  Ph.D student of CBI (Center of Bioinformatics)
Peking University  100871 P.R.China
Email: wux at mail.cbi.pku.edu.cn
Tel: 010-62762409 (dorm)
     010-62755206 (office)
Address: Building 47#2026 Peking University
*****************************************************



More information about the Biojava-l mailing list