[Biojava-l] classes in biojava able to handle 3D protein structures ???

[Schreiber, Mark]

Hi -
 
Not yet is the simple answer, I'm pretty keen to code something like this but I don't have a great deal of knowledge about structure. My guess is an alphabet to contain backbone coordinates or phi/ psi angles would be a good place to start.
 
- Mark
 

	-----Original Message----- 
	From: Antoine Logean [mailto:antoine.logean at pharma.anbi.ethz.ch] 
	Sent: Sat 12/04/2003 12:07 a.m. 
	To: biojava-l at biojava.org 
	Cc: 
	Subject: [Biojava-l] classes in biojava able to handle 3D protein structures ???
	
	

	Hello,
	
	Are there classes, in the biojava library, that can work with 3D
	coordinates of protein structures (in form of PDB files)? for example:
	transform the cartesian coordinates in internal coordinates, rotate
	dihedral angles of the backbone atoms, the dihedral angles of the side
	chains,  .... and so on ...
	
	Thanks
	
	Antoine
	
	
	
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