[Biojava-l] Question about BioJava DASClient classes
Thu, 12 Sep 2002 11:31:25 -0400
I also noticed an inconsistency with the numberOfIdentities and the
percentageIdentity of the HSPSummary element. The identities are 0 but the
percentage identity is 100. This seems strange to me. Am I interpretting
the results incorrectly?
Keith James <firstname.lastname@example.org> on 09/11/2002 05:30:46 PM
To: "Patrick McConnell" <MCCon012@mc.duke.edu>
Subject: Re: [Biojava-l] Question about BioJava DASClient classes
>>>>> "Patrick" == Patrick McConnell <MCCon012@mc.duke.edu> writes:
Patrick> Incidentally, it breaks on fasta34t10d3 - the error is:
Patrick> org.biojava.utils.ParserException: Fasta parser failed to
Patrick> recognise line type Parsing line: 37 ; pg_open-ext: -10
Alrighty. That's an easy one - it's designed to break when it finds
new/unknown lines in the output and pg_open-ext is a new one.
When I get hold of the source for 34t10d3 (ftp site is down right now)
I'll add it to the supported versions & the test suite.
- Keith James <email@example.com> bioinformatics programming support -
- Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -