[Biojava-l] Parsing SwissProt flat file through BioJava

[Rahul Deshpande]

Hello,

I am Rahul Deshpande. I work for a bio informatics company. Recently I came
across biojava.
I have a question about biojava.

How can we read the SwissProt flat files using biojava? The closest we could
come was org.biojava.bio.seq.io.EmblLikeFormat class which has methods to
return the two letter code and the remaining data in the line. Can we
retrieve the data for each protein in the SwissProt flat file instead of
reading each line by each line? Are there any methods like that?

Regards,
Rahul Deshpande
Molecularconnections Pvt. Ltd.
A203, Blue Cross Chambers,
Infantry Road Cross,
Bangalore 560001
Ph: +(91)-80-5598502, 5327919