[Biojava-l] Restriction Enzyme Support
Tue, 18 Jun 2002 18:51:33 -0400 (EDT)
if you wanted example code and can read Perl code see
Bio::Tools::RestrictionEnzyme - see
the docs at http://docs.bioperl.org for the module code and methods.
We also use it as part of Bio::Tools::Gel to produce product sizes -
virtual gel pictures are just around the corner ;)
On Wed, 19 Jun 2002, Schreiber, Mark wrote:
> Hi -
> I don't believe that there is, although conceivably one wouldn't be hard
> to make and would probably be quite useful. Anyone interested in making
> one could probably take a lead from the proteomics package and the
> protease digestion classes. Any takers?
> - Mark
> > -----Original Message-----
> > From: Ryan Cuprak [mailto:email@example.com]
> > Sent: Wednesday, 19 June 2002 1:41 a.m.
> > To: firstname.lastname@example.org
> > Subject: [Biojava-l] Restriction Enzyme Support
> > Hello,
> > I was just curious if there are any tools in biojava package
> > that given a restriction enzyme (sequence on which it cuts)
> > will dice up a DNA symbol list and return the resulting fragments?
> > Thanks,
> > Ryan Cuprak
> > _______________________________________________
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> > http://biojava.org/mailman/listinfo/biojava-l
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jason at cgt.mc.duke.edu