[Biojava-l] Need a hand?

[Shailesh L Mistry]

>>>>b) emboss integration - launch emboss apps either via command line or as
>>>>native methods
>> 
>> do you mean biojava ->emboss or biojava->jemboss->emboss?
>>
> 
> Either one. I think you can convince emboss to generate custom stub code 
> (using their program invocation meta-data stuff), so perhaps a realy 
> thin customization layer (like jemboss) that sucks emboss apps in 
> direct, and also auto-generating java->external_process stubs. I don't 
> know what is easiest and most platform neutral.

ok, I will go with this one and start the ball rolling with the Emboss people.

Shelly.