[Biojava-l] GEO SOFT-file parser?
03 Jul 2002 13:17:35 +0100
>>>>> "Petri" == Petri Pehkonen <email@example.com> writes:
Petri> Hi, Does there exist any parser that can parse SOFT-files
Petri> of NCBI's Gene Expression Omnibus database?
Not exactly. However if you are a Java developer there is a toolkit
for quickly creating parsers for tag-value file formats like SOFT. See
the org.biojava.bio.program.tagvalue package.
I wanted a parser for REBASE (format #31) files which have a similar
structure. See org.biojava.bio.molbio.RestrictionEnzymeManager for an
implementation using the tagvalue package (in development CVS HEAD).
Petri> I would be also interested in parser for Medline-abstract
Sorry, I can't help with this one.
-= Keith James - firstname.lastname@example.org - http://www.sanger.ac.uk/Users/kdj =-
Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Cambridge, UK