[Biojava-l] SAX parser additions and update

[Simon Brocklehurst]

Dear All,

FYI, I've just checked the following classes into the cvs.

In package org.biojava.bio.program.sax:

o An update version of PdbSAXParser.java - more robust parsing of 3-D
molecular structure data

o A new class - NeedleAlignmentSAXParser.java - parsing of multiple
alignments from the program Needle (EMBOSS).  NB this class is package
private, functionality is accessed via the class below

o A new class - SequenceAlignmentSAXParser.java - parsing of multiple
sequence alignments in different formats.  The format is autodetected.
Current formats support are Needle and ClustalW only.

Simon
--
Simon M. Brocklehurst, Ph.D.
Head of Bioinformatics & Advanced IS
Cambridge Antibody Technology
The Science Park, Melbourn, Cambridgeshire, UK
http://www.CambridgeAntibody.com/
mailto:simon.brocklehurst@CambridgeAntibody.com