[Biojava-l] taxa

[Matthew Pocock]

Hi.

I've checked in a preliminary taxa implementation to:

org.biojava.bio.taxa

There is a demo at:

demos/seq/TestSwissprotOrg.java

and I've added a seq io object to:

org.biojava.bio.seq.io.OrganismParser

There is some work to do - I think Taxa instances should be annotatable, 
and also the stringification API should be split out into a light-weight 
interface.

Anyway, please give me feedback - I've pumped swissprot-40 through it 
(using both SimpleTaxaFactory and WeakTaxaFactory) and it works for me - 
anybody feel like pumping Embl through?

All the best,

Matthew

ps The Sequence IO interface rocks!