[Biojava-l] Build failing

David Waring dwaring@u.washington.edu
Wed, 11 Dec 2002 10:42:46 -0800


Thanks ant clean worked!

> -----Original Message-----
> From: David Huen [mailto:david.huen@ntlworld.com]
> Sent: Tuesday, December 10, 2002 5:03 PM
> To: David Waring
> Subject: Re: [Biojava-l] Build failing
> 
> 
> On Wednesday 11 Dec 2002 12:20 am, David Waring wrote:
> 
> I've just done an update which got me these files but mine 
> compiles fine.  
> You might consider a cvs update -d and an ant clean before recompiling 
> perhaps?
> 
> Regards,
> David
> 
> > I got the following errors when I tried to build biojava-live
> >
> > compile:
> >     [javac] Compiling 799 source files to
> > V:\dwaring\cvs\biojava-live\ant-build\
> > classes\main
> 
> You seem to be copying rather fewer files than me here: i have 
> 936 at this 
> point.  Mine is slightly customised but not to this extent.
> 
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:198: interface expected here
> >     [javac]     private static class BlankFilterWriter implements
> > XMLFilterWrite
> > r {
> >     [javac]                                                       ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:217: interface expected here
> >     [javac]     private static abstract class PropertyFilterWriter
> > implements XM
> > LFilterWriter {
> >     [javac]
> > ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:313: interface expected here
> >     [javac]     private static class AndFilterWriter implements
> > XMLFilterWriter
> > {
> >     [javac]                                                     ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:340: interface expected here
> >     [javac]     private static class OrFilterWriter implements
> > XMLFilterWriter {
> >
> >     [javac]                                                    ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:112: cannot resolve symbol
> >     [javac] symbol  : class IsTopLevel
> >     [javac] location: interface org.biojava.bio.seq.FeatureFilter
> >     [javac]                 FeatureFilter.IsTopLevel.class,
> >     [javac]                              ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> > o\filterxml\XMLFilterWriterConfig.java:185:
> > writeFilter(org.biojava.bio.seq.Feat
> > ureFilter,org.biojava.utils.xml.XMLWriter) in
> > org.biojava.bio.seq.io.filterxml.X
> > MLFilterWriter cannot be applied to
> > (org.biojava.bio.seq.FeatureFilter,org.bioja
> > 
> va.utils.xml.XMLWriter,org.biojava.bio.seq.io.filterxml.XMLFilterWriterCo
> >nfi g)
> >     [javac]                 xfw.writeFilter(ff, xw, this);
> >     [javac]                    ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\progr
> > am\das\DASMergeFeatureHolder.java:35: cannot resolve symbol
> >     [javac] symbol  : method getMergeMap  ()
> >     [javac] location: class
> > org.biojava.bio.program.das.DASMergeFeatureHolder
> >     [javac]     Map mm = getMergeMap();
> >     [javac]                  ^
> >     [javac]
> > V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\progr
> > am\das\DASMergeFeatureHolder.java:48: cannot resolve symbol
> >     [javac] symbol  : method getMergeMap  ()
> >     [javac] location: class
> > org.biojava.bio.program.das.DASMergeFeatureHolder
> >     [javac]     Map mm = getMergeMap();
> >     [javac]                  ^
> >     [javac] Note: Some input files use or override a deprecated API.
> >     [javac] Note: Recompile with -deprecation for details.
> >     [javac] 8 errors
> >
> > BUILD FAILED
> > file:V:/dwaring/cvs/biojava-live/build.xml:281: Compile failed; see the
> > compiler
> >  error output for details.
> >
> > Total time: 1 minute 27 seconds
> >
> >
> >
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