[Biojava-l] I search for java.jar

[jon portuondo murguiondo]

Hello,
I have a problem when I try to execute the program PdbToXML. I think the problem is I don't have the java.jar library, but where I can find it? (I have linux). I would be very pleased you could help me.
The errors are the following (if you think the problem is not the java.jar library, tell me please!):
[jon@diana ~]$ java PdbToXMLConverter 1FS1.pdb 
Exception in thread "main" java.lang.NoClassDefFoundError: PdbToXMLConverter (wrong name: org/biojava/bio/program/PdbToXMLConverter)
        at java.lang.ClassLoader.defineClass0(Native Method)
        at java.lang.ClassLoader.defineClass(ClassLoader.java:502)
        at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:123)
        at java.net.URLClassLoader.defineClass(URLClassLoader.java:250)
        at java.net.URLClassLoader.access$100(URLClassLoader.java:54)
        at java.net.URLClassLoader$1.run(URLClassLoader.java:193)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:186)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:299)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:265)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:255)
        at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:315)