[Biojava-l] parse blast results

[Wiepert, Mathieu]

Hi,
So is there a fix that needs to be put into Biojava then?  Is there a bug in
BlastSAXParser?  We should fix that if we have to.

-Mat


-----Original Message-----
From: 	richard cai [mailto:cairi1@yahoo.com] 
Sent:	Thursday, October 18, 2001 4:12 PM
To:	biojava-l@biojava.org
Subject:	Re: [Biojava-l] parse blast results

Thanks, Howard.  This is exactly what I need. 

Richard Cai


--- Howard Ungar <howard_ungar@yahoo.com> wrote:
> By "QueryId" do you mean the line in the Blast
> report that starts with
> "Query="?  If so, then I have done exactly what you
> are trying to do.
> 
> Unfortunately, I had to modify one of the biojava
> source files
> (BlastSAXParser.java), so you will need my changes. 
> Let me know and I
> will forward the source and examples to you.
> 
> If this change sounds useful to others, then it may
> make sense to
> update this file in the CVS archive.  Let me know
> and I will email it
> along.
> 
> Howard
> --- richard cai <cairi1@yahoo.com> wrote:
> > Dear Fellow BioJava-ers,
> > 
> > I was trying to parse a ncbi-blast results file,
> > basically using Simon Brocklehurst's demo program
> and
> > I couldn't retrieve QueryId.  It seems that the
> > attribute list doesn't contain the attribute
> > "QueryId".
> > Could someone with previous experience give me
> some
> > hint and help?
> > 
> > Thanks.
> > 
> > Richard Cai
> > 
> > __________________________________________________
> > Do You Yahoo!?
> > Make a great connection at Yahoo! Personals.
> > http://personals.yahoo.com
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l@biojava.org
> > http://biojava.org/mailman/listinfo/biojava-l
> 
> 
> __________________________________________________
> Do You Yahoo!?
> Make a great connection at Yahoo! Personals.
> http://personals.yahoo.com


__________________________________________________
Do You Yahoo!?
Make a great connection at Yahoo! Personals.
http://personals.yahoo.com
_______________________________________________
Biojava-l mailing list  -  Biojava-l@biojava.org
http://biojava.org/mailman/listinfo/biojava-l