[Biojava-l] parse blast results

[Howard Ungar]

By "QueryId" do you mean the line in the Blast report that starts with
"Query="?  If so, then I have done exactly what you are trying to do.

Unfortunately, I had to modify one of the biojava source files
(BlastSAXParser.java), so you will need my changes.  Let me know and I
will forward the source and examples to you.

If this change sounds useful to others, then it may make sense to
update this file in the CVS archive.  Let me know and I will email it
along.

Howard
--- richard cai <cairi1@yahoo.com> wrote:
> Dear Fellow BioJava-ers,
> 
> I was trying to parse a ncbi-blast results file,
> basically using Simon Brocklehurst's demo program and
> I couldn't retrieve QueryId.  It seems that the
> attribute list doesn't contain the attribute
> "QueryId".
> Could someone with previous experience give me some
> hint and help?
> 
> Thanks.
> 
> Richard Cai
> 
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