[Biojava-l] SymbolTokenization patch

[Matthew Pocock]

>   - AllSymbolsAlphabet has been removed.  I know some
>     people (Matthew?) find this very useful, so I should
>     probably write a replacement.


Does this one cause you problems? I used to find it usefull for reading 
in fasta files with arbitrary single char encodings for things like HMM 
alignments. Nowadays, I tend to just build a parser from the state 
alphabet of the HMM anyway, so everything works out fine without it.

M