[Biojava-l] Mixing order of models

[Mark Schreiber]

Hi -

A while ago I asked a question about mixing the order of Markov Models.
The reason I want to do this is that some regions contain enough sequence
to make 2nd order models other regions can easily make 5th order models. I
seem to remember someone suggesting the use of redundant hexamers to mimic
trimers (or something), how would this work??

Alternativey could a model in state system be used?

ps thanks to the DP package authors for making my life a lot easier!

Mark

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Mark Schreiber			Ph: 64 3 4797875
Rm 218				email mark_s@sanger.otago.ac.nz
Department of Biochemistry	email m.schreiber@clear.net.nz
University of Otago		
PO Box 56
Dunedin
New Zealand
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