[Biojava-l] Re: Gene expression data/microarrays

[Dickson, Mike]

BTW,  accompanying MAGEML is MAGEOM, an object model on which MAGEML is
based.  The team developing MAGEML started from a "platform" (as in
implementation technology) neutral model: MAGEOM and then produced MAGEML as
an instance of it.  MAGEOM would be a logical place to start in developing
Java models for expression data.

The team developing these two expression representations has been doing top
notch work.  There was supposed to have been a coding jamboree last month
which would have produced (amongst other things) java code to implement the
models.  If the licensing is reasonable this might be a good start for
inclusion of expression data into BioJava.

Mike

-----Original Message-----
From: Lucy McWilliam [mailto:lejm3@hermes.cam.ac.uk]
Sent: Wednesday, October 03, 2001 12:55 PM
To: biojava-l@biojava.org
Subject: [Biojava-l] Re: Gene expression data/microarrays



On Wed, 3 Oct 2001, Manuel Simoni wrote:

> Is MAML the (current) last word on microarrays? I feel that getting an
> overview of the emerging standards is pretty hard.

State of the art is MAGEML - microarray/gene expression markup language.
See http://sourceforge.net/projects/mged/


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Lucy McWilliam				Email: lejm3@cam.ac.uk
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