[Biojava-l] Regexp matching performance

Sharon L. Cousins Sharon L. Cousins" <sc@informatics.jax.org
Wed, 16 May 2001 15:47:01 -0400 (EDT)


Hello!

Was wondering if any of you could comment on the performance of the Gnu or Oro 
(or any other) Regexp packages for Java. 

I have rewritten our Python implementation of sequence record parsers and 
filters (for both Genbank and EMBL format ) in Java and have narrowed down poor 
performance problems to regular expression matching.

Thanks,

Sharon