[Biojava-l] ABI basecaller output file format
tim.dilks
tim.dilks@cambridgeantibody.com
Wed, 27 Jun 2001 17:23:17 +0100
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Hi
The ABI file format is a rather horrible binary format. A simple =
explanation
of how to parse out the important parts can be found at:
http://people.ne.mediaone.net/dhk42/abitechnical.html
Very detailed information on the format can be found at:
http://www.lb.cs.cmu.edu/~genome/Papers/clark.html
As far as I'm aware there isn't currently any support for these files in
Biojava.
Hope this helps
Tim Dilks
----- Original Message -----
From: "David Huen" <smh1008@cus.cam.ac.uk>
To: <biojava-l@biojava.org>
Sent: Wednesday, June 27, 2001 4:39 PM
Subject: [Biojava-l] ABI basecaller output file format
> Does anyone know what is the format of these files and whether we have
> support for them somewhere in Biojava?
>
> Thanks,
> David Huen
>
> _______________________________________________
> Biojava-l mailing list - Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
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<DIV><FONT face=3DArial size=3D2>Hi<BR><BR>The ABI file format is a =
rather horrible=20
binary format. A simple explanation<BR>of how to parse out the important =
parts=20
can be found at:<BR><A=20
href=3D"http://people.ne.mediaone.net/dhk42/abitechnical.html">http://peo=
ple.ne.mediaone.net/dhk42/abitechnical.html</A><BR><BR>Very=20
detailed information on the format can be found at:<BR><A=20
href=3D"http://www.lb.cs.cmu.edu/~genome/Papers/clark.html">http://www.lb=
.cs.cmu.edu/~genome/Papers/clark.html</A><BR><BR>As=20
far as I'm aware there isn't currently any support for these files=20
in<BR>Biojava.<BR><BR>Hope this helps<BR>Tim Dilks<BR><BR>----- Original =
Message=20
-----<BR>From: "David Huen" <<A=20
href=3D"mailto:smh1008@cus.cam.ac.uk">smh1008@cus.cam.ac.uk</A>><BR>To=
: <<A=20
href=3D"mailto:biojava-l@biojava.org">biojava-l@biojava.org</A>><BR>Se=
nt:=20
Wednesday, June 27, 2001 4:39 PM<BR>Subject: [Biojava-l] ABI basecaller =
output=20
file format<BR><BR><BR>> Does anyone know what is the format of these =
files=20
and whether we have<BR>> support for them somewhere in=20
Biojava?<BR>><BR>> Thanks,<BR>> David Huen<BR>><BR>>=20
_______________________________________________<BR>> Biojava-l =
mailing=20
list - <A=20
href=3D"mailto:Biojava-l@biojava.org">Biojava-l@biojava.org</A><BR>> =
<A=20
href=3D"http://biojava.org/mailman/listinfo/biojava-l">http://biojava.org=
/mailman/listinfo/biojava-l</A></FONT></DIV></BODY></HTML>
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