[Biojava-l] Re: Ragbag compiling...

[David Huen]

On Mon, 25 Jun 2001, Wiepert, Mathieu wrote:

> Dear David,
> 	I am busy trying to compile the source, so that I can place Mark
> Schreiber's code for phred parsing.  I am getting a compile error in ragbag,
> and I am not sure if it is my problem, or a problem in the class.  Can I
> assume that you were able to compile the whole source before you put your
> code?  
> 
> I did a fresh update before I tried to compile, about 10 minutes ago.  If
> you are curious, the error is 
> 
>     [javac] Compiling 256 source files to
> G:\bio\biojava-live\ant-build\classes\main
>     [javac]
> G:\bio\biojava-live\ant-build\src\main\org\biojava\bio\seq\ragbag\RagbagDire
> ctoryHandler.java:84: cannot resolve symbol
>     [javac] symbol  : constructor RagbagVirtualSequenceBuilder
> (java.lang.String,java.lang.String,java.io.File)
>     [javac] location: class
> org.biojava.bio.seq.ragbag.RagbagVirtualSequenceBuilder
>     [javac]         new RagbagVirtualSequenceBuilder(thisDir.getName(), "",
> mapFile);
>     [javac]         ^
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -deprecation for details.
>     [javac] 1 error
> 
That class (RagbagDirectoryHandler) was removed on my end and replaced
with another of a completely different name.  I thought I blew it away
from CVS.  I'll check - sorry for the incovenience.  For now, could you
just delete it from your source tree and it should go.

Regards,
David