[Biojava-l] binary code does not work

[Bruce Ling]

I have tried this a while ago and got it working.

My problem is not at the compile time but rather run time. For compile time,
make sure you have put the demos directory and src directory in your path.

The only part I have changed in the TutorialEx1.java is to change the mode
to lazy in the middle of the program otherwise I got run time exceptions:

After you have create a SAX Parser, original code doesnot set the mode to
lazy, that has caused me some problems.

just add that line solves the problem.  Let me know if that helps.


	/**
	 * Create a SAX Parser
	 */
	XMLReader oParser = (XMLReader) new BlastLikeSAXParser();
//add by bruce ling at tularik
        ((BlastLikeSAXParser)oParser).setModeLazy();


Thanks.

Bruce Ling, Ph.D.
Director, Bioinformatics
Tularik, Inc -- http://www.tularik.com
Email: bruce@tularik.com
Phone: 650-825-7143
fax: 1-435-804-4009

> -----Original Message-----
> From: biojava-l-admin@biojava.org [mailto:biojava-l-admin@biojava.org]On
> Behalf Of Lun Xiao
> Sent: Tuesday, July 24, 2001 12:50 AM
> To: biojava-l@biojava.org
> Subject: [Biojava-l] binary code does not work
>
>
> Hi,
> I downloaded biojava-20010702 and tried to run the TutorialEx1 example. I
> got
> an error
> Exception in thread "main" java.lang.NoSuchMethodError:
> java.lang.StringBuffer:
> method append(Ljava/lang/StringBuffer;)Ljava/lang/StringBuffer; not found
>         at
> org.biojava.bio.program.sax.BlastLikeAlignmentSAXParser.parseLine(Bla
> stLikeAlignmentSAXParser.java:305)
>
> How could this happen?
>
> Thanks
>
> Lun Xiao
>
> my email lunxiao@yahoo.com
>
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