[Biojava-l] Parsing ClustalW output

[Johan Hattne]

Hi, all.

Has anybody had any luck in parsing output from ClustalW using biojava's
ClustalWAlignmentSAXParser? I can get it to return the sequences' names,
but I'm hoping to get at the sequence's symbols. I've looped through the
attribute lists sent to my handler's startElement() method, but there only
seems to be one attribute: the name.

// Rgds; Johan


_______________________________________________________________________________
Johan Hattne * Rackarbergsgatan 34:432 * S-752 32 UPPSALA * SWEDEN * 018-505684
  Mol. Biotech. & Engineering Phys. * auzzie@yodel.net * http://www.yodel.net