[Biojava-l] Splice Variants

[Ranjan.George]

Hi All,

Am fairly new to this forum, but have been a regular reader of it and have
been looking at BioJava for the past few months.

Our requirement is to display the possible Splice Variants of a Gene.  I
have noticed that there is
a SpliceVariant interface and also coupla other interfaces like Gene/Exon
which all contribute to being
Features of a Sequence.

However I don't see any of these actually being used when I do a features()
on a Sequence.
The iterator only returns me a SimpleStrandedFeature().  Am I missing
something or is the Feature Hierarchy still at an early stage and is just
evolving?



Regards,

Ranjan George
i labs SAGA Bio-informatics
Phone : 91-040-3352900/2 Ext.1006
Fax     : 91-040-3351522
Email  : ranjan_george@i-labs.ws
http://www.i-labs.ws