[Biojava-l] microarray expression data

[Martin Sterman]

We have no code, but we now have an email subject!
Thank you for the suggestion Mike.  I have not seen
your name on this list before.  Brief intro?

I am not sure how much time I will have to
devote to this, but if I were to create a plan, it would
be useful to know whether expression development priorities that
parallel the original sequence priorities would make sense.

Martin Sterman
----- Original Message -----
From: "Mike Jones" <mjones@mpi.com>
To: "Martin Sterman" <msterman>
Cc: "ZHOU, YIHUA [FND/1000]" <yihua.zhou@monsanto.com>;
<biojava-l@biojava.org>; <bioxml-dev@bioxml.org>
Sent: Thursday, January 25, 2001 11:50 AM
Subject: Re: [Biojava-l] (no subject)


> Someone should make a parser and possibly viewers/clustering tools
> using one of the XML gene expression standards. MGED preferably.
> Their are some Java clustering tools so maybe those could be ported.
>
> Martin Sterman wrote:
>
> > Hello,
> >
> > I am new to the BioJava list, so not sure what the current state
> > of microarray expression data is, but assuming there are possibilities
> > here, I have interest in contributing.
> >
> > A bit about myself, I have an MS in Biochemical Engineering and worked
> > several years for Genzyme Corp.  I have since migrated toward
> > software development, finishing a Certificate in Computer Science
> > from U Mass (a compressed BS in Comp Sc) and am now working
> > for a software company called eXcelon Corp.
> >
> > I am particularly interested in utilizing XML data format and tools.
> > eXcelon makes a proprietary XML data server ("Portal Server")
> > but we adhere to all W3C standards.  I may utilize our products
> > during development, but all code will adhere to vendor neutral
> > standards.
> >
> > Is there publically available data?  What is the current format?
> > What is your thinking of the needs in this area?
> >
> > Martin Sterman
> > eXcelon Corp.
> > 781-674-5324
> >
> > ----- Original Message -----
> > From: "ZHOU, YIHUA [FND/1000]" <yihua.zhou@monsanto.com>
> > To: <biojava-l@biojava.org>
> > Sent: Tuesday, January 23, 2001 10:02 AM
> > Subject: [Biojava-l] (no subject)
> >
> > > BioJava is doing a great job in representing and processing sequence
data.
> > > How about microarray expression data? Is there anyone actively
involved in
> > > this area? Who should I talk to for potential contribution in this
> > > sub-project?
> > >
> > > Thanks.
> > >
> > > Yihua Zhou, Ph.D.
> > > Sr. Bioinformatics Scientist
> > > Monsanto Company
> > > 314-694-5053
> > >
> > > _______________________________________________
> > > Biojava-l mailing list  -  Biojava-l@biojava.org
> > > http://biojava.org/mailman/listinfo/biojava-l
> > >
> >
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