[Biojava-l] EmblProcessor

Thomas Down td2@sanger.ac.uk
Fri, 19 Jan 2001 14:39:25 +0000


On Fri, Jan 19, 2001 at 03:19:47PM +0100, Julia Boettcher wrote:
> Hello,
> 
> In the 3rd chapter of your Tutorial
> (http://www.biojava.org/tutorials/chap_iobasics.html) the class
> EmblProcessor is used. Does this class exist already? Do you know a
> working Parser for EMBL- and SWISSPROT-flatfiles? 

Yes, EmblProcessor does exist, as does a corresponding
SwissprotProcessor (although I'm not absolutely sure about
the status of that one).  Both of them are used as
`post-processing' filters for EmblLikeProcessor, as
described in the tutorial.

If you can't find these files, it may be that you're using
an old version of Biojava.  Sequence I/O is one of the
things that has changed significantly since the 1.0x
releases.  If you want to use the new I/O, you'll need to
download the latest snapshot from:

  http://biojava.org/download/binaries/

Alternatively, you can get an up-to-the-minute version from
anonymous CVS -- see:

  http://cvs.biojava.org/

Let me know if you have any trouble,

   Thomas.