[Biojava-l] HMM's and Distributions

[Mark Schreiber]

Hi,

As a bit of a learning excercise I am recoding the Dice.java demo to work
with the new definitions of some of the Seq and Dist and DP classes. This
may also be useful to others so I may post it when finished.

I have on quick question. I notice that transition probabilities are
passed to a HMM as a Distribution object. How would one construct such an
object to hold the transitions and probabilities??

Sorry for the newbie question but I think my documentation is a bit out of
date.

Mark

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Mark Schreiber			Ph: 64 3 4797875
Rm 218				email mark_s@sanger.otago.ac.nz
Department of Biochemistry	email m.schreiber@clear.net.nz
University of Otago		
PO Box 56
Dunedin
New Zealand
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