[Biojava-l] sample code information is needed
Simon Brocklehurst
simon.brocklehurst@CambridgeAntibody.com
Tue, 02 Jan 2001 09:46:04 +0000
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Bruce Ling wrote:
> Hi,I am a new user for bio java. I have poked around the biojava
> code for a while and obviously I need some help.Is it possible that
> someone can provide some sample code for 1. parsing the blast file and
> HMMER output file2. parsing and transformation of XML file.One general
> comment: bioperl seems to have more functionality than biojava. Has
> biojava thought about converting most of the bioperl functionality
> into java?
Bruce,
I'm on to this. Should have tutorial stuff for this later this week.
Simon
--
Simon M. Brocklehurst, Ph.D.
Head of Bioinformatics & Advanced IS
Cambridge Antibody Technology
The Science Park, Melbourn, Cambridgeshire, UK
http://www.CambridgeAntibody.com/
mailto:simon.brocklehurst@CambridgeAntibody.com
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<p>Bruce Ling wrote:
<blockquote TYPE=CITE> <span
class=164211507-25122000><font face="Arial"><font size=-1>Hi,</font></font></span><span
class=164211507-25122000></span><span class=164211507-25122000><font face="Arial"><font size=-1>I
am a new user for bio java. I have poked around the biojava code
for a while and obviously I need some help.</font></font></span><span
class=164211507-25122000></span><span class=164211507-25122000><font face="Arial"><font size=-1>Is
it possible that someone can provide some sample code for </font></font></span><span
class=164211507-25122000></span><span class=164211507-25122000><font face="Arial"><font size=-1>1.
parsing the blast file and HMMER output file</font></font></span><span class=164211507-25122000><font face="Arial"><font size=-1>2.
parsing and transformation of XML file.</font></font></span><span class=164211507-25122000><font face="Arial"><font size=-1>One
general comment: bioperl seems to have more functionality than biojava.
Has biojava thought about converting most of the bioperl functionality
into java?</font></font></span></blockquote>
Bruce,
<p>I'm on to this. Should have tutorial stuff for this later this
week.
<p>Simon
<br>--
<br>Simon M. Brocklehurst, Ph.D.
<br>Head of Bioinformatics & Advanced IS
<br>Cambridge Antibody Technology
<br>The Science Park, Melbourn, Cambridgeshire, UK
<br><A HREF="http://www.CambridgeAntibody.com/">http://www.CambridgeAntibody.com/</A>
<br><A HREF="mailto:simon.brocklehurst@CambridgeAntibody.com">mailto:simon.brocklehurst@CambridgeAntibody.com</A>
<br> </html>
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