[Biojava-l] Blast?

Jeffrey Chang jchang@SMI.Stanford.EDU
Wed, 28 Feb 2001 10:21:51 -0800 (PST)

> Any better solutions, anyone change the blast itself?

I've done this before, to try to get it to output better formatted
alignments.  However, that ended up being a huge exercise in tracing
through arcane, poorly documented c code, decomposed in non-obvious ways.
My conclusion is that it's probably not worth doing for format changes,
but possible if you need to change behavior.