[Biojava-l] GenBank Parser Error

Simon Foote foote@nrcbsa.bio.nrc.ca
Mon, 12 Feb 2001 11:21:43 -0500


I have stumbled across an error with the GenBank parser.  If the 
location string for a gene is similar to the following:

gene           order(AF084223.1:1..265,1..245)

It will  give a bad locator error.  (Test with Genbank Accession AF084223)
I know the version being in the parantheses is causing the problem, but 
haven't figured out an easy way to correct this yet.
Anyone have a quick fix for this.


Bioinformatics Specialist
Institute for Biological Sciences
National Research Council of Canada
[T] 613-991-4342  [F] 613-952-9092