[Biojava-l] isoelectric point

Thomas Down td2@sanger.ac.uk
Tue, 18 Dec 2001 21:25:54 +0000


On Tue, Dec 18, 2001 at 05:17:40PM +0100, Schaerfke, Marco, Dr., Xzillion/DE wrote:
> Hi,
> 
> I am looking for a java class that calculates the isoelectric point of a
> given sequence.
> Can anybody help me ?

There isn't anything to do this in BioJava currently (unless
I've missed it...).  However, it's something which could be
added quite easily, if you've got the relevant tables.

There's already some support for handling tables of residue
properties (see ResidueProperties.xml, in the resources tree,
and the class org.biojava.bio.proteomics.MassCalc).

    Thomas.