[Biojava-l] Blast2HTML - a new Blast-Like SAX parsing example

[Matthew Pocock]

Thanks Colin. Cool!

Matthew

Colin Hardman wrote:

> 
> Hello,
>         I've just checked in a new package called
> org.biojava.bio.program.blast2html. It's a companion  to the
> org.biojava.bio.program.sax package allowing you to go from blast-like
> output to HTML, through a stream of SAX events. This means it should
> scale to very large outputs indeed - though your browser may struggle!
> 
> There are faster ways of creating HTML from such an output, however it's
> a nice example of how to write a content handler, plus I've added the
> ability to markup the alignment in various ways. It should also work for
> all the programs that can be parsed by the Blast-Like parser, though I
> haven't tested them all.
> 
> There is a new program in the demos/eventbasedparsing called Blast2HTML
> and the <A
> HREF="http://www.biojava.org/tutorials/blastlikeParsingCookBook/index.html">tutorial</A>
> has been updated, including some <A
> HREF="http://www.biojava.org/tutorials/blastlikeParsingCookBook/blastp.html">example<A> output.
> 
> Colin
> 
> --
> Bioinformatics & Advanced IS
> Cambridge Antibody Technology
> The Science Park, Melbourn, Cambridgeshire, UK
> http://www.CambridgeAntibody.com/
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