[Biojava-l] Pfam utilities

Matthew Pocock mrp@sanger.ac.uk
Mon, 02 Apr 2001 10:55:23 +0100


Arnon Klein wrote:

> Hi,
>  Is there existing code that parses/analyzes Pfam libraries?
> 
> Arnon
> 
> --
> 
> 
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Last time I checked we didn't have an out-of-the-box solution. It would 
be realy good to have - the interpro project is on my list of things to 
publish as DAS. There may be parsers that nearly do the job either in 
....programs.search or ....programs.sax and if you can convince the Pfam 
suite to talk gff, we have parsers for that in ....programs.gff - Can 
anybody else confirm/deny our Pfam abilities?

Matthew