[Biojava-l] references

Bjarni Vilhjalmur Halldorsson bjarni@cmu.edu
Tue, 30 May 2000 13:42:47 -0400


Personally I would try to extend on bibtex, which is a reference extension
to latex.

http://www.ecst.csuchico.edu/~jacobsd/bib/formats/bibtex.html

The class should also contain the pubmed id of the article.

Bjarni


Matthew Pocock wrote:

> Dear all,
>
> References to literature are things that need representing in EMBL,
> GENBANK, SwissProt entries (and almost certainly in other contexts). It
> would be nice if we could supply a Reference interface under
> org.biojava.utils - what should the interface contain?
>
> interface Reference {
>   // a List of Author objects
>   List getAuthors();
>
>   String getJournal();
>   int getVolume();
>   int getStartPage();
>   int getEndPage();
> }
>
> interface Author {
>   char [] getInitials();
>   String getSurname();
> }
>
> What is missing? What shouldn't be here? Is it needed at all?
>
> Matthew
>
> --
> Joon: You're out of your tree
> Sam:  It wasn't my tree
>                                                  (Benny & Joon)
>
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